NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,350.8 |
| Mean read quality |
11.7 |
| Median read length |
2,248.0 |
| Median read quality |
12.5 |
| Number of reads |
129,874.0 |
| Read length N50 |
2,533.0 |
| STDEV read length |
926.3 |
| Total bases |
305,306,172.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
129874 (100.0%) 305.3Mb |
| >Q7 |
129874 (100.0%) 305.3Mb |
| >Q10 |
119243 (91.8%) 280.9Mb |
| >Q12 |
78977 (60.8%) 189.1Mb |
| >Q15 |
9931 (7.6%) 24.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.9 (2385) |
| 2 |
19.9 (2597) |
| 3 |
19.7 (2154) |
| 4 |
19.4 (1915) |
| 5 |
19.3 (2639) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13115 (10.9) |
| 2 |
12678 (12.6) |
| 3 |
12233 (12.1) |
| 4 |
10796 (9.6) |
| 5 |
10195 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot