NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,399.1 |
| Mean read quality |
12.1 |
| Median read length |
3,385.0 |
| Median read quality |
13.0 |
| Number of reads |
174,856.0 |
| Read length N50 |
3,616.0 |
| STDEV read length |
963.8 |
| Total bases |
594,353,671.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
174856 (100.0%) 594.4Mb |
| >Q7 |
174856 (100.0%) 594.4Mb |
| >Q10 |
165124 (94.4%) 562.2Mb |
| >Q12 |
122778 (70.2%) 421.1Mb |
| >Q15 |
20609 (11.8%) 71.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.0 (1763) |
| 2 |
19.8 (3530) |
| 3 |
19.7 (2852) |
| 4 |
19.4 (3349) |
| 5 |
19.3 (3246) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12807 (9.6) |
| 2 |
12680 (13.1) |
| 3 |
12354 (11.6) |
| 4 |
12282 (12.7) |
| 5 |
11492 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot