NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,639.5 |
| Mean read quality |
12.5 |
| Median read length |
2,569.0 |
| Median read quality |
13.7 |
| Number of reads |
195,585.0 |
| Read length N50 |
2,840.0 |
| STDEV read length |
963.8 |
| Total bases |
516,245,943.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
195585 (100.0%) 516.2Mb |
| >Q7 |
195585 (100.0%) 516.2Mb |
| >Q10 |
185372 (94.8%) 489.9Mb |
| >Q12 |
146742 (75.0%) 391.4Mb |
| >Q15 |
53154 (27.2%) 147.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.7 (2148) |
| 2 |
20.5 (2446) |
| 3 |
20.5 (2555) |
| 4 |
20.4 (2763) |
| 5 |
20.3 (2534) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13331 (15.5) |
| 2 |
12184 (11.1) |
| 3 |
10862 (11.5) |
| 4 |
10039 (13.1) |
| 5 |
9841 (15.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot