NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,479.5 |
| Mean read quality |
11.8 |
| Median read length |
2,434.0 |
| Median read quality |
12.8 |
| Number of reads |
11,608.0 |
| Read length N50 |
2,698.0 |
| STDEV read length |
926.7 |
| Total bases |
28,782,062.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11608 (100.0%) 28.8Mb |
| >Q7 |
11608 (100.0%) 28.8Mb |
| >Q10 |
10547 (90.9%) 26.2Mb |
| >Q12 |
7154 (61.6%) 17.9Mb |
| >Q15 |
1839 (15.8%) 4.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.2 (1518) |
| 2 |
19.7 (4036) |
| 3 |
19.4 (3021) |
| 4 |
19.4 (2447) |
| 5 |
18.8 (3993) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7891 (10.8) |
| 2 |
7817 (13.1) |
| 3 |
7600 (15.8) |
| 4 |
7550 (11.8) |
| 5 |
7424 (13.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot