NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,347.0 |
| Mean read quality |
11.5 |
| Median read length |
2,259.0 |
| Median read quality |
12.2 |
| Number of reads |
20,423.0 |
| Read length N50 |
2,544.0 |
| STDEV read length |
936.8 |
| Total bases |
47,933,569.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
20423 (100.0%) 47.9Mb |
| >Q7 |
20423 (100.0%) 47.9Mb |
| >Q10 |
17917 (87.7%) 42.0Mb |
| >Q12 |
10966 (53.7%) 25.6Mb |
| >Q15 |
2684 (13.1%) 6.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.5 (2200) |
| 2 |
19.5 (2282) |
| 3 |
19.5 (2414) |
| 4 |
19.4 (2004) |
| 5 |
19.4 (3604) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13691 (9.6) |
| 2 |
8700 (15.5) |
| 3 |
8013 (13.0) |
| 4 |
7610 (15.0) |
| 5 |
7262 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot