NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,525.3 |
| Mean read quality |
10.9 |
| Median read length |
2,431.0 |
| Median read quality |
11.4 |
| Number of reads |
11,416.0 |
| Read length N50 |
2,694.0 |
| STDEV read length |
976.0 |
| Total bases |
28,828,867.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11416 (100.0%) 28.8Mb |
| >Q7 |
11416 (100.0%) 28.8Mb |
| >Q10 |
9324 (81.7%) 23.5Mb |
| >Q12 |
4386 (38.4%) 11.0Mb |
| >Q15 |
570 (5.0%) 1.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.8 (2130) |
| 2 |
18.6 (3756) |
| 3 |
18.5 (2096) |
| 4 |
18.5 (3524) |
| 5 |
18.2 (1741) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
24957 (16.3) |
| 2 |
11871 (14.8) |
| 3 |
10028 (14.0) |
| 4 |
9528 (9.4) |
| 5 |
8485 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot