NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,593.9 |
| Mean read quality |
10.9 |
| Median read length |
2,483.0 |
| Median read quality |
11.4 |
| Number of reads |
13,073.0 |
| Read length N50 |
2,802.0 |
| STDEV read length |
1,034.4 |
| Total bases |
33,909,647.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
13073 (100.0%) 33.9Mb |
| >Q7 |
13073 (100.0%) 33.9Mb |
| >Q10 |
10678 (81.7%) 27.7Mb |
| >Q12 |
5212 (39.9%) 13.6Mb |
| >Q15 |
775 (5.9%) 2.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.2 (2721) |
| 2 |
19.2 (2007) |
| 3 |
19.0 (2496) |
| 4 |
18.8 (2666) |
| 5 |
18.8 (1967) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12771 (13.5) |
| 2 |
11697 (9.4) |
| 3 |
10648 (10.7) |
| 4 |
8978 (13.3) |
| 5 |
8913 (14.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot