NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,514.3 |
| Mean read quality |
10.8 |
| Median read length |
2,439.0 |
| Median read quality |
11.3 |
| Number of reads |
2,293.0 |
| Read length N50 |
2,674.0 |
| STDEV read length |
842.4 |
| Total bases |
5,765,334.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2293 (100.0%) 5.8Mb |
| >Q7 |
2293 (100.0%) 5.8Mb |
| >Q10 |
1877 (81.9%) 4.7Mb |
| >Q12 |
783 (34.1%) 2.0Mb |
| >Q15 |
55 (2.4%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (4042) |
| 2 |
17.2 (2095) |
| 3 |
17.0 (1923) |
| 4 |
17.0 (1775) |
| 5 |
16.8 (2132) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10898 (12.7) |
| 2 |
7444 (12.3) |
| 3 |
7180 (11.6) |
| 4 |
5906 (9.7) |
| 5 |
5778 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot