NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,314.5 |
| Mean read quality |
11.2 |
| Median read length |
2,180.0 |
| Median read quality |
11.8 |
| Number of reads |
29,517.0 |
| Read length N50 |
2,504.0 |
| STDEV read length |
1,021.0 |
| Total bases |
68,315,875.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
29517 (100.0%) 68.3Mb |
| >Q7 |
29517 (100.0%) 68.3Mb |
| >Q10 |
25075 (85.0%) 57.9Mb |
| >Q12 |
14001 (47.4%) 32.1Mb |
| >Q15 |
2683 (9.1%) 6.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.4 (3250) |
| 2 |
19.4 (2323) |
| 3 |
19.2 (2130) |
| 4 |
18.9 (1868) |
| 5 |
18.8 (2375) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
21328 (12.8) |
| 2 |
16608 (10.4) |
| 3 |
9832 (10.9) |
| 4 |
9288 (9.4) |
| 5 |
8577 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot