NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,416.4 |
| Mean read quality |
11.5 |
| Median read length |
2,321.0 |
| Median read quality |
12.2 |
| Number of reads |
7,680.0 |
| Read length N50 |
2,638.0 |
| STDEV read length |
1,028.5 |
| Total bases |
18,557,878.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7680 (100.0%) 18.6Mb |
| >Q7 |
7680 (100.0%) 18.6Mb |
| >Q10 |
6723 (87.5%) 16.3Mb |
| >Q12 |
4056 (52.8%) 9.8Mb |
| >Q15 |
912 (11.9%) 2.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.9 (2986) |
| 2 |
19.5 (2620) |
| 3 |
18.8 (2416) |
| 4 |
18.8 (2824) |
| 5 |
18.7 (2087) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27696 (12.0) |
| 2 |
14101 (14.4) |
| 3 |
14049 (10.6) |
| 4 |
8090 (12.7) |
| 5 |
7899 (15.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot