NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,465.3 |
| Mean read quality |
11.7 |
| Median read length |
2,410.0 |
| Median read quality |
12.5 |
| Number of reads |
21,317.0 |
| Read length N50 |
2,690.0 |
| STDEV read length |
969.0 |
| Total bases |
52,553,232.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
21317 (100.0%) 52.6Mb |
| >Q7 |
21317 (100.0%) 52.6Mb |
| >Q10 |
19116 (89.7%) 47.1Mb |
| >Q12 |
12272 (57.6%) 30.5Mb |
| >Q15 |
2933 (13.8%) 7.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.4 (3408) |
| 2 |
19.4 (2987) |
| 3 |
19.0 (4099) |
| 4 |
18.9 (4184) |
| 5 |
18.7 (2701) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
22771 (11.0) |
| 2 |
11290 (10.5) |
| 3 |
8501 (11.1) |
| 4 |
8447 (11.4) |
| 5 |
8442 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot