NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,237.1 |
| Mean read quality |
12.2 |
| Median read length |
2,166.0 |
| Median read quality |
13.3 |
| Number of reads |
155,284.0 |
| Read length N50 |
2,419.0 |
| STDEV read length |
891.8 |
| Total bases |
347,391,689.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
155284 (100.0%) 347.4Mb |
| >Q7 |
155284 (100.0%) 347.4Mb |
| >Q10 |
145292 (93.6%) 325.2Mb |
| >Q12 |
108537 (69.9%) 246.0Mb |
| >Q15 |
30767 (19.8%) 73.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.2 (3235) |
| 2 |
20.7 (2866) |
| 3 |
20.5 (3231) |
| 4 |
20.5 (2538) |
| 5 |
20.3 (3135) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14108 (9.6) |
| 2 |
12414 (9.8) |
| 3 |
11392 (9.5) |
| 4 |
10961 (9.6) |
| 5 |
10248 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot