NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,381.9 |
| Mean read quality |
12.1 |
| Median read length |
2,319.0 |
| Median read quality |
13.1 |
| Number of reads |
7,571.0 |
| Read length N50 |
2,616.0 |
| STDEV read length |
972.0 |
| Total bases |
18,033,405.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7571 (100.0%) 18.0Mb |
| >Q7 |
7571 (100.0%) 18.0Mb |
| >Q10 |
7023 (92.8%) 16.7Mb |
| >Q12 |
5134 (67.8%) 12.4Mb |
| >Q15 |
1406 (18.6%) 3.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.6 (2427) |
| 2 |
18.6 (3174) |
| 3 |
18.5 (2015) |
| 4 |
18.5 (3960) |
| 5 |
18.4 (2751) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11598 (13.3) |
| 2 |
7839 (13.2) |
| 3 |
7599 (10.3) |
| 4 |
7548 (14.0) |
| 5 |
7170 (15.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot