NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,499.7 |
| Mean read quality |
10.6 |
| Median read length |
2,366.0 |
| Median read quality |
11.0 |
| Number of reads |
9,306.0 |
| Read length N50 |
2,679.0 |
| STDEV read length |
1,068.9 |
| Total bases |
23,262,474.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9306 (100.0%) 23.3Mb |
| >Q7 |
9306 (100.0%) 23.3Mb |
| >Q10 |
7234 (77.7%) 18.1Mb |
| >Q12 |
2676 (28.8%) 6.8Mb |
| >Q15 |
208 (2.2%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.9 (2376) |
| 2 |
18.6 (3584) |
| 3 |
18.5 (3950) |
| 4 |
18.0 (2024) |
| 5 |
17.9 (2198) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37330 (13.9) |
| 2 |
11336 (10.2) |
| 3 |
10006 (9.8) |
| 4 |
8839 (16.7) |
| 5 |
8497 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot