NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,363.5 |
| Mean read quality |
10.6 |
| Median read length |
2,217.0 |
| Median read quality |
11.1 |
| Number of reads |
13,566.0 |
| Read length N50 |
2,521.0 |
| STDEV read length |
983.2 |
| Total bases |
32,063,869.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
13566 (100.0%) 32.1Mb |
| >Q7 |
13566 (100.0%) 32.1Mb |
| >Q10 |
10595 (78.1%) 25.1Mb |
| >Q12 |
4076 (30.0%) 9.6Mb |
| >Q15 |
302 (2.2%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.1 (2647) |
| 2 |
18.1 (1813) |
| 3 |
18.0 (2782) |
| 4 |
17.9 (1982) |
| 5 |
17.8 (2406) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
22337 (11.2) |
| 2 |
13740 (11.0) |
| 3 |
12395 (10.1) |
| 4 |
10916 (14.6) |
| 5 |
10842 (15.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot