NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,960.3 |
| Mean read quality |
11.4 |
| Median read length |
1,831.0 |
| Median read quality |
12.2 |
| Number of reads |
38,266.0 |
| Read length N50 |
2,133.0 |
| STDEV read length |
887.8 |
| Total bases |
75,014,319.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38266 (100.0%) 75.0Mb |
| >Q7 |
38266 (100.0%) 75.0Mb |
| >Q10 |
33525 (87.6%) 65.4Mb |
| >Q12 |
20102 (52.5%) 38.9Mb |
| >Q15 |
4191 (11.0%) 8.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.9 (1941) |
| 2 |
19.3 (2067) |
| 3 |
19.2 (2721) |
| 4 |
19.1 (3175) |
| 5 |
19.0 (2824) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11595 (13.7) |
| 2 |
9727 (13.4) |
| 3 |
9252 (12.1) |
| 4 |
9046 (15.1) |
| 5 |
8600 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot