NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,730.5 |
| Mean read quality |
12.7 |
| Median read length |
3,629.0 |
| Median read quality |
13.8 |
| Number of reads |
92,126.0 |
| Read length N50 |
4,138.0 |
| STDEV read length |
1,312.6 |
| Total bases |
343,677,861.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
92126 (100.0%) 343.7Mb |
| >Q7 |
92126 (100.0%) 343.7Mb |
| >Q10 |
88491 (96.1%) 331.0Mb |
| >Q12 |
71198 (77.3%) 268.0Mb |
| >Q15 |
26278 (28.5%) 100.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.7 (378) |
| 2 |
20.6 (5270) |
| 3 |
20.5 (4693) |
| 4 |
20.3 (3095) |
| 5 |
20.2 (3320) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12603 (16.8) |
| 2 |
12578 (14.0) |
| 3 |
12564 (12.4) |
| 4 |
11563 (12.7) |
| 5 |
11360 (14.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot