NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,438.3 |
| Mean read quality |
12.4 |
| Median read length |
2,409.0 |
| Median read quality |
13.4 |
| Number of reads |
58,873.0 |
| Read length N50 |
2,671.0 |
| STDEV read length |
926.1 |
| Total bases |
143,552,133.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
58873 (100.0%) 143.6Mb |
| >Q7 |
58873 (100.0%) 143.6Mb |
| >Q10 |
55619 (94.5%) 135.8Mb |
| >Q12 |
42667 (72.5%) 106.0Mb |
| >Q15 |
12768 (21.7%) 33.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.1 (2364) |
| 2 |
19.9 (2646) |
| 3 |
19.8 (4052) |
| 4 |
19.7 (2009) |
| 5 |
19.7 (3659) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12595 (14.0) |
| 2 |
11275 (10.1) |
| 3 |
10326 (14.2) |
| 4 |
9471 (13.6) |
| 5 |
9252 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot