NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,513.7 |
| Mean read quality |
12.0 |
| Median read length |
2,462.0 |
| Median read quality |
12.9 |
| Number of reads |
67,953.0 |
| Read length N50 |
2,698.0 |
| STDEV read length |
895.8 |
| Total bases |
170,810,427.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
67953 (100.0%) 170.8Mb |
| >Q7 |
67953 (100.0%) 170.8Mb |
| >Q10 |
64020 (94.2%) 161.4Mb |
| >Q12 |
45776 (67.4%) 116.8Mb |
| >Q15 |
6625 (9.7%) 17.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.1 (3366) |
| 2 |
19.4 (2204) |
| 3 |
19.3 (2445) |
| 4 |
19.2 (1347) |
| 5 |
19.1 (2828) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33733 (16.4) |
| 2 |
33433 (14.1) |
| 3 |
15867 (13.7) |
| 4 |
9149 (12.2) |
| 5 |
8105 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot