NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,165.3 |
| Mean read quality |
11.5 |
| Median read length |
2,058.5 |
| Median read quality |
12.3 |
| Number of reads |
65,494.0 |
| Read length N50 |
2,346.0 |
| STDEV read length |
997.7 |
| Total bases |
141,813,850.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
65494 (100.0%) 141.8Mb |
| >Q7 |
65494 (100.0%) 141.8Mb |
| >Q10 |
58601 (89.5%) 127.0Mb |
| >Q12 |
36642 (55.9%) 80.2Mb |
| >Q15 |
5037 (7.7%) 11.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.5 (3340) |
| 2 |
20.6 (988) |
| 3 |
20.1 (2330) |
| 4 |
20.0 (3609) |
| 5 |
19.5 (56250) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
86353 (12.1) |
| 2 |
56250 (19.5) |
| 3 |
22513 (11.3) |
| 4 |
9036 (9.3) |
| 5 |
8963 (14.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot