NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,961.6 |
| Mean read quality |
12.1 |
| Median read length |
3,872.0 |
| Median read quality |
13.0 |
| Number of reads |
12,620.0 |
| Read length N50 |
4,423.0 |
| STDEV read length |
1,426.8 |
| Total bases |
49,995,320.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
12620 (100.0%) 50.0Mb |
| >Q7 |
12620 (100.0%) 50.0Mb |
| >Q10 |
11913 (94.4%) 47.4Mb |
| >Q12 |
8126 (64.4%) 32.6Mb |
| >Q15 |
2194 (17.4%) 8.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.0 (5049) |
| 2 |
19.7 (3453) |
| 3 |
19.5 (2644) |
| 4 |
19.5 (308) |
| 5 |
19.4 (4091) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15387 (15.0) |
| 2 |
11690 (9.4) |
| 3 |
11298 (12.5) |
| 4 |
11282 (12.6) |
| 5 |
11276 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot