NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,918.9 |
| Mean read quality |
11.8 |
| Median read length |
3,784.5 |
| Median read quality |
12.4 |
| Number of reads |
8,948.0 |
| Read length N50 |
4,386.0 |
| STDEV read length |
1,458.9 |
| Total bases |
35,065,985.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8948 (100.0%) 35.1Mb |
| >Q7 |
8948 (100.0%) 35.1Mb |
| >Q10 |
8476 (94.7%) 33.4Mb |
| >Q12 |
5096 (57.0%) 20.2Mb |
| >Q15 |
925 (10.3%) 3.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.2 (3374) |
| 2 |
19.1 (3088) |
| 3 |
19.1 (3454) |
| 4 |
19.0 (5911) |
| 5 |
18.9 (3808) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11741 (9.5) |
| 2 |
10414 (12.1) |
| 3 |
10027 (14.0) |
| 4 |
9220 (10.5) |
| 5 |
9143 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot