NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,786.6 |
| Mean read quality |
10.6 |
| Median read length |
2,675.0 |
| Median read quality |
11.1 |
| Number of reads |
3,245.0 |
| Read length N50 |
3,001.0 |
| STDEV read length |
1,074.2 |
| Total bases |
9,042,633.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3245 (100.0%) 9.0Mb |
| >Q7 |
3245 (100.0%) 9.0Mb |
| >Q10 |
2594 (79.9%) 7.3Mb |
| >Q12 |
985 (30.4%) 2.8Mb |
| >Q15 |
52 (1.6%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (2566) |
| 2 |
17.5 (2122) |
| 3 |
17.4 (3816) |
| 4 |
17.1 (3305) |
| 5 |
17.0 (2634) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8915 (11.3) |
| 2 |
8164 (10.4) |
| 3 |
7783 (9.8) |
| 4 |
7671 (10.6) |
| 5 |
7664 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot