NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,422.9 |
| Mean read quality |
11.0 |
| Median read length |
2,348.0 |
| Median read quality |
11.6 |
| Number of reads |
27,343.0 |
| Read length N50 |
2,600.0 |
| STDEV read length |
937.0 |
| Total bases |
66,248,325.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
27343 (100.0%) 66.2Mb |
| >Q7 |
27343 (100.0%) 66.2Mb |
| >Q10 |
23181 (84.8%) 56.3Mb |
| >Q12 |
11374 (41.6%) 27.8Mb |
| >Q15 |
1489 (5.4%) 3.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.3 (23247) |
| 2 |
20.6 (3201) |
| 3 |
19.9 (23391) |
| 4 |
19.9 (2283) |
| 5 |
19.6 (767) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
23391 (19.9) |
| 2 |
23247 (22.3) |
| 3 |
22883 (18.9) |
| 4 |
16743 (17.8) |
| 5 |
11897 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot