NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,756.2 |
| Mean read quality |
11.6 |
| Median read length |
3,640.0 |
| Median read quality |
12.2 |
| Number of reads |
7,199.0 |
| Read length N50 |
4,185.0 |
| STDEV read length |
1,377.0 |
| Total bases |
27,040,912.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7199 (100.0%) 27.0Mb |
| >Q7 |
7199 (100.0%) 27.0Mb |
| >Q10 |
6789 (94.3%) 25.7Mb |
| >Q12 |
3869 (53.7%) 14.8Mb |
| >Q15 |
672 (9.3%) 2.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.1 (3690) |
| 2 |
19.5 (2685) |
| 3 |
19.3 (5209) |
| 4 |
19.0 (1872) |
| 5 |
19.0 (3148) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11320 (12.3) |
| 2 |
9210 (11.4) |
| 3 |
9194 (10.0) |
| 4 |
8576 (9.4) |
| 5 |
8510 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot