NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,866.9 |
| Mean read quality |
10.6 |
| Median read length |
1,684.0 |
| Median read quality |
11.1 |
| Number of reads |
13,212.0 |
| Read length N50 |
2,038.0 |
| STDEV read length |
967.8 |
| Total bases |
24,665,365.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
13212 (100.0%) 24.7Mb |
| >Q7 |
13212 (100.0%) 24.7Mb |
| >Q10 |
10589 (80.1%) 19.6Mb |
| >Q12 |
4075 (30.8%) 7.5Mb |
| >Q15 |
334 (2.5%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.9 (832) |
| 2 |
18.7 (2581) |
| 3 |
18.7 (1519) |
| 4 |
18.6 (1879) |
| 5 |
18.5 (1819) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
29672 (10.3) |
| 2 |
23332 (11.4) |
| 3 |
21173 (17.5) |
| 4 |
11118 (12.1) |
| 5 |
9280 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot