NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,785.1 |
| Mean read quality |
11.8 |
| Median read length |
3,660.5 |
| Median read quality |
12.5 |
| Number of reads |
8,054.0 |
| Read length N50 |
4,234.0 |
| STDEV read length |
1,437.1 |
| Total bases |
30,484,840.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8054 (100.0%) 30.5Mb |
| >Q7 |
8054 (100.0%) 30.5Mb |
| >Q10 |
7607 (94.4%) 29.0Mb |
| >Q12 |
4754 (59.0%) 18.2Mb |
| >Q15 |
967 (12.0%) 3.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.2 (4102) |
| 2 |
19.7 (1878) |
| 3 |
19.6 (2771) |
| 4 |
19.6 (2812) |
| 5 |
19.6 (2943) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10117 (12.0) |
| 2 |
9371 (10.9) |
| 3 |
9100 (9.6) |
| 4 |
9026 (9.8) |
| 5 |
8951 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot