NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,961.1 |
| Mean read quality |
11.6 |
| Median read length |
2,938.0 |
| Median read quality |
12.3 |
| Number of reads |
3,335.0 |
| Read length N50 |
3,167.0 |
| STDEV read length |
962.2 |
| Total bases |
9,875,314.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3335 (100.0%) 9.9Mb |
| >Q7 |
3335 (100.0%) 9.9Mb |
| >Q10 |
2938 (88.1%) 8.7Mb |
| >Q12 |
1817 (54.5%) 5.5Mb |
| >Q15 |
490 (14.7%) 1.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.8 (3917) |
| 2 |
18.6 (4065) |
| 3 |
18.5 (2527) |
| 4 |
18.5 (3369) |
| 5 |
18.4 (4011) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9719 (12.0) |
| 2 |
8449 (11.2) |
| 3 |
7646 (12.9) |
| 4 |
7625 (13.4) |
| 5 |
7262 (11.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot