NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,729.6 |
| Mean read quality |
10.5 |
| Median read length |
2,601.5 |
| Median read quality |
11.0 |
| Number of reads |
3,520.0 |
| Read length N50 |
2,919.0 |
| STDEV read length |
1,037.9 |
| Total bases |
9,608,209.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3520 (100.0%) 9.6Mb |
| >Q7 |
3520 (100.0%) 9.6Mb |
| >Q10 |
2757 (78.3%) 7.6Mb |
| >Q12 |
997 (28.3%) 2.8Mb |
| >Q15 |
42 (1.2%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (1220) |
| 2 |
16.6 (1402) |
| 3 |
16.4 (2532) |
| 4 |
16.4 (1732) |
| 5 |
16.3 (2546) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14139 (13.1) |
| 2 |
10077 (15.8) |
| 3 |
8831 (9.4) |
| 4 |
8353 (10.4) |
| 5 |
7978 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot