NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,869.2 |
| Mean read quality |
10.9 |
| Median read length |
2,817.0 |
| Median read quality |
11.4 |
| Number of reads |
2,570.0 |
| Read length N50 |
3,121.0 |
| STDEV read length |
1,031.6 |
| Total bases |
7,373,774.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2570 (100.0%) 7.4Mb |
| >Q7 |
2570 (100.0%) 7.4Mb |
| >Q10 |
2085 (81.1%) 6.0Mb |
| >Q12 |
978 (38.1%) 2.9Mb |
| >Q15 |
137 (5.3%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.4 (4374) |
| 2 |
17.6 (1862) |
| 3 |
17.6 (2966) |
| 4 |
17.5 (1947) |
| 5 |
17.5 (3133) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10489 (10.5) |
| 2 |
7699 (11.7) |
| 3 |
7665 (13.0) |
| 4 |
7601 (11.1) |
| 5 |
7385 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot