NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,939.5 |
| Mean read quality |
12.4 |
| Median read length |
2,986.0 |
| Median read quality |
13.6 |
| Number of reads |
589,031.0 |
| Read length N50 |
3,151.0 |
| STDEV read length |
740.1 |
| Total bases |
1,731,444,143.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
589031 (100.0%) 1731.4Mb |
| >Q7 |
589031 (100.0%) 1731.4Mb |
| >Q10 |
552444 (93.8%) 1627.5Mb |
| >Q12 |
427344 (72.6%) 1267.7Mb |
| >Q15 |
160739 (27.3%) 485.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.5 (3475) |
| 2 |
20.8 (2582) |
| 3 |
20.7 (3704) |
| 4 |
20.6 (3072) |
| 5 |
20.6 (3045) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10280 (10.3) |
| 2 |
9903 (11.6) |
| 3 |
9602 (13.1) |
| 4 |
9077 (11.4) |
| 5 |
9042 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot