NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,308.9 |
| Mean read quality |
12.4 |
| Median read length |
3,276.0 |
| Median read quality |
13.5 |
| Number of reads |
375,280.0 |
| Read length N50 |
3,591.0 |
| STDEV read length |
1,085.0 |
| Total bases |
1,241,745,432.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
375280 (100.0%) 1241.7Mb |
| >Q7 |
375280 (100.0%) 1241.7Mb |
| >Q10 |
351740 (93.7%) 1167.3Mb |
| >Q12 |
270409 (72.1%) 906.1Mb |
| >Q15 |
98987 (26.4%) 338.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.5 (3051) |
| 2 |
21.2 (3666) |
| 3 |
21.2 (5209) |
| 4 |
21.1 (4231) |
| 5 |
20.6 (1779) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14287 (12.1) |
| 2 |
13464 (9.3) |
| 3 |
13248 (9.4) |
| 4 |
13126 (16.3) |
| 5 |
12314 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot