NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,348.2 |
| Mean read quality |
12.5 |
| Median read length |
3,270.0 |
| Median read quality |
13.6 |
| Number of reads |
258,950.0 |
| Read length N50 |
3,633.0 |
| STDEV read length |
1,117.8 |
| Total bases |
867,014,886.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
258950 (100.0%) 867.0Mb |
| >Q7 |
258950 (100.0%) 867.0Mb |
| >Q10 |
243640 (94.1%) 818.1Mb |
| >Q12 |
188545 (72.8%) 638.5Mb |
| >Q15 |
71721 (27.7%) 249.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.8 (4181) |
| 2 |
20.7 (5246) |
| 3 |
20.7 (3432) |
| 4 |
20.5 (3215) |
| 5 |
20.5 (4416) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12766 (12.3) |
| 2 |
12330 (14.6) |
| 3 |
12283 (16.3) |
| 4 |
11997 (13.5) |
| 5 |
11297 (15.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot