NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,594.4 |
| Mean read quality |
12.5 |
| Median read length |
3,527.0 |
| Median read quality |
13.7 |
| Number of reads |
223,697.0 |
| Read length N50 |
3,858.0 |
| STDEV read length |
1,144.6 |
| Total bases |
804,063,778.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
223697 (100.0%) 804.1Mb |
| >Q7 |
223697 (100.0%) 804.1Mb |
| >Q10 |
210874 (94.3%) 760.0Mb |
| >Q12 |
165591 (74.0%) 602.2Mb |
| >Q15 |
64396 (28.8%) 238.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.6 (3685) |
| 2 |
20.3 (4705) |
| 3 |
20.3 (6300) |
| 4 |
20.2 (2929) |
| 5 |
20.2 (3994) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16424 (16.4) |
| 2 |
12419 (16.6) |
| 3 |
12188 (10.7) |
| 4 |
11301 (13.6) |
| 5 |
11212 (16.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot