NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,783.6 |
| Mean read quality |
11.9 |
| Median read length |
2,751.0 |
| Median read quality |
13.4 |
| Number of reads |
180,309.0 |
| Read length N50 |
2,969.0 |
| STDEV read length |
804.1 |
| Total bases |
501,899,629.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
180309 (100.0%) 501.9Mb |
| >Q7 |
180309 (100.0%) 501.9Mb |
| >Q10 |
157951 (87.6%) 442.3Mb |
| >Q12 |
124485 (69.0%) 351.6Mb |
| >Q15 |
41359 (22.9%) 119.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.2 (1308) |
| 2 |
20.1 (2133) |
| 3 |
20.0 (3433) |
| 4 |
19.9 (3644) |
| 5 |
19.8 (2852) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11825 (7.9) |
| 2 |
9482 (11.7) |
| 3 |
9308 (9.3) |
| 4 |
9218 (13.5) |
| 5 |
8490 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot