NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,879.0 |
| Mean read quality |
12.4 |
| Median read length |
3,911.0 |
| Median read quality |
14.0 |
| Number of reads |
157,815.0 |
| Read length N50 |
4,200.0 |
| STDEV read length |
1,118.8 |
| Total bases |
612,168,937.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
157815 (100.0%) 612.2Mb |
| >Q7 |
157815 (100.0%) 612.2Mb |
| >Q10 |
141372 (89.6%) 551.6Mb |
| >Q12 |
117919 (74.7%) 464.3Mb |
| >Q15 |
53243 (33.7%) 212.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.7 (2718) |
| 2 |
20.7 (4436) |
| 3 |
20.6 (6270) |
| 4 |
20.6 (3431) |
| 5 |
20.5 (5109) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12523 (16.9) |
| 2 |
12385 (16.1) |
| 3 |
12208 (16.5) |
| 4 |
12196 (12.6) |
| 5 |
12107 (7.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot