NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,526.2 |
| Mean read quality |
12.3 |
| Median read length |
4,587.5 |
| Median read quality |
13.3 |
| Number of reads |
67,336.0 |
| Read length N50 |
5,007.0 |
| STDEV read length |
1,424.9 |
| Total bases |
304,773,860.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
67336 (100.0%) 304.8Mb |
| >Q7 |
67336 (100.0%) 304.8Mb |
| >Q10 |
63340 (94.1%) 288.3Mb |
| >Q12 |
46615 (69.2%) 213.4Mb |
| >Q15 |
17237 (25.6%) 79.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.8 (3151) |
| 2 |
20.8 (4397) |
| 3 |
20.5 (4905) |
| 4 |
20.5 (7534) |
| 5 |
20.3 (5514) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13221 (12.1) |
| 2 |
12641 (13.1) |
| 3 |
12513 (10.4) |
| 4 |
11663 (13.9) |
| 5 |
11546 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot