NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,102.2 |
| Mean read quality |
11.9 |
| Median read length |
3,106.0 |
| Median read quality |
13.4 |
| Number of reads |
431,610.0 |
| Read length N50 |
3,366.0 |
| STDEV read length |
1,012.6 |
| Total bases |
1,338,941,672.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
431610 (100.0%) 1338.9Mb |
| >Q7 |
431610 (100.0%) 1338.9Mb |
| >Q10 |
372952 (86.4%) 1167.4Mb |
| >Q12 |
292334 (67.7%) 925.8Mb |
| >Q15 |
110918 (25.7%) 361.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.2 (371) |
| 2 |
20.5 (2899) |
| 3 |
20.4 (3332) |
| 4 |
20.2 (3629) |
| 5 |
20.0 (2663) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
29745 (9.9) |
| 2 |
11955 (14.7) |
| 3 |
11491 (13.0) |
| 4 |
11175 (13.8) |
| 5 |
11041 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot