NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,223.6 |
| Mean read quality |
12.3 |
| Median read length |
3,208.0 |
| Median read quality |
13.4 |
| Number of reads |
219,636.0 |
| Read length N50 |
3,488.0 |
| STDEV read length |
1,023.8 |
| Total bases |
708,021,366.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
219636 (100.0%) 708.0Mb |
| >Q7 |
219636 (100.0%) 708.0Mb |
| >Q10 |
204752 (93.2%) 662.7Mb |
| >Q12 |
152620 (69.5%) 500.2Mb |
| >Q15 |
53352 (24.3%) 180.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.5 (1971) |
| 2 |
20.3 (4298) |
| 3 |
20.2 (2658) |
| 4 |
20.1 (6541) |
| 5 |
20.1 (2822) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
42315 (20.0) |
| 2 |
12574 (14.1) |
| 3 |
11806 (11.8) |
| 4 |
11721 (10.1) |
| 5 |
10951 (11.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot