NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,842.7 |
| Mean read quality |
13.1 |
| Median read length |
2,724.0 |
| Median read quality |
14.3 |
| Number of reads |
185,053.0 |
| Read length N50 |
3,054.0 |
| STDEV read length |
1,004.3 |
| Total bases |
526,048,162.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
185053 (100.0%) 526.0Mb |
| >Q7 |
185053 (100.0%) 526.0Mb |
| >Q10 |
180187 (97.4%) 513.1Mb |
| >Q12 |
155580 (84.1%) 446.7Mb |
| >Q15 |
64926 (35.1%) 194.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.5 (3056) |
| 2 |
20.5 (4912) |
| 3 |
20.1 (4837) |
| 4 |
20.1 (4450) |
| 5 |
20.0 (3338) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11327 (12.8) |
| 2 |
10555 (9.7) |
| 3 |
9901 (13.4) |
| 4 |
9801 (12.7) |
| 5 |
9514 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot