NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,984.7 |
| Mean read quality |
11.4 |
| Median read length |
1,942.0 |
| Median read quality |
12.7 |
| Number of reads |
45,602.0 |
| Read length N50 |
2,165.0 |
| STDEV read length |
797.6 |
| Total bases |
90,504,861.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
45602 (100.0%) 90.5Mb |
| >Q7 |
45602 (100.0%) 90.5Mb |
| >Q10 |
38048 (83.4%) 76.8Mb |
| >Q12 |
27681 (60.7%) 57.2Mb |
| >Q15 |
6451 (14.1%) 13.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.0 (2352) |
| 2 |
19.6 (3248) |
| 3 |
19.2 (1519) |
| 4 |
19.0 (1802) |
| 5 |
18.9 (1788) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25753 (7.3) |
| 2 |
8765 (9.1) |
| 3 |
6626 (13.5) |
| 4 |
6481 (14.9) |
| 5 |
6046 (14.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot