NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,414.1 |
| Mean read quality |
12.0 |
| Median read length |
3,435.0 |
| Median read quality |
13.6 |
| Number of reads |
321,956.0 |
| Read length N50 |
3,690.0 |
| STDEV read length |
1,059.2 |
| Total bases |
1,099,181,386.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
321956 (100.0%) 1099.2Mb |
| >Q7 |
321956 (100.0%) 1099.2Mb |
| >Q10 |
283515 (88.1%) 975.2Mb |
| >Q12 |
227687 (70.7%) 791.5Mb |
| >Q15 |
85653 (26.6%) 303.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.7 (2618) |
| 2 |
20.5 (2162) |
| 3 |
20.4 (4328) |
| 4 |
20.3 (2811) |
| 5 |
20.3 (3959) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11547 (15.1) |
| 2 |
11410 (12.7) |
| 3 |
11329 (13.7) |
| 4 |
11268 (9.0) |
| 5 |
11247 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot