NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,309.2 |
| Mean read quality |
12.4 |
| Median read length |
3,280.0 |
| Median read quality |
13.5 |
| Number of reads |
86,366.0 |
| Read length N50 |
3,632.0 |
| STDEV read length |
1,095.6 |
| Total bases |
285,803,464.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
86366 (100.0%) 285.8Mb |
| >Q7 |
86366 (100.0%) 285.8Mb |
| >Q10 |
81347 (94.2%) 270.4Mb |
| >Q12 |
61757 (71.5%) 208.2Mb |
| >Q15 |
22710 (26.3%) 78.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.1 (4988) |
| 2 |
20.3 (4882) |
| 3 |
20.2 (3816) |
| 4 |
20.1 (2474) |
| 5 |
20.1 (4344) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10780 (14.2) |
| 2 |
10338 (13.1) |
| 3 |
9887 (11.8) |
| 4 |
8894 (12.6) |
| 5 |
8715 (11.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot