NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,600.0 |
| Mean read quality |
11.8 |
| Median read length |
2,578.0 |
| Median read quality |
13.3 |
| Number of reads |
398,698.0 |
| Read length N50 |
2,787.0 |
| STDEV read length |
826.0 |
| Total bases |
1,036,611,680.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
398698 (100.0%) 1036.6Mb |
| >Q7 |
398698 (100.0%) 1036.6Mb |
| >Q10 |
344284 (86.4%) 902.3Mb |
| >Q12 |
266876 (66.9%) 707.4Mb |
| >Q15 |
93782 (23.5%) 255.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.3 (1977) |
| 2 |
20.4 (2817) |
| 3 |
20.3 (3871) |
| 4 |
20.3 (3305) |
| 5 |
20.2 (3862) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9969 (7.5) |
| 2 |
9777 (12.8) |
| 3 |
9759 (10.0) |
| 4 |
9742 (8.6) |
| 5 |
9371 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot