NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,068.5 |
| Mean read quality |
10.9 |
| Median read length |
3,062.0 |
| Median read quality |
11.9 |
| Number of reads |
3,482.0 |
| Read length N50 |
3,394.0 |
| STDEV read length |
1,076.5 |
| Total bases |
10,684,548.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3482 (100.0%) 10.7Mb |
| >Q7 |
3482 (100.0%) 10.7Mb |
| >Q10 |
2593 (74.5%) 8.1Mb |
| >Q12 |
1698 (48.8%) 5.3Mb |
| >Q15 |
560 (16.1%) 1.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.4 (2433) |
| 2 |
19.3 (2794) |
| 3 |
18.9 (3815) |
| 4 |
18.9 (3491) |
| 5 |
18.6 (3833) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7711 (10.1) |
| 2 |
6669 (14.0) |
| 3 |
6423 (15.7) |
| 4 |
6388 (11.6) |
| 5 |
6356 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot