NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,585.8 |
| Mean read quality |
11.5 |
| Median read length |
2,570.0 |
| Median read quality |
12.9 |
| Number of reads |
16,268.0 |
| Read length N50 |
2,866.0 |
| STDEV read length |
1,438.9 |
| Total bases |
42,065,960.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
16268 (100.0%) 42.1Mb |
| >Q7 |
16268 (100.0%) 42.1Mb |
| >Q10 |
13336 (82.0%) 35.3Mb |
| >Q12 |
9773 (60.1%) 26.6Mb |
| >Q15 |
3547 (21.8%) 10.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.4 (3029) |
| 2 |
19.2 (2247) |
| 3 |
18.9 (1416) |
| 4 |
18.9 (2229) |
| 5 |
18.8 (2528) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
132111 (7.4) |
| 2 |
9664 (7.9) |
| 3 |
7573 (15.2) |
| 4 |
7304 (13.6) |
| 5 |
7172 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot