NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,344.6 |
| Mean read quality |
12.6 |
| Median read length |
3,323.0 |
| Median read quality |
13.8 |
| Number of reads |
40,556.0 |
| Read length N50 |
3,625.0 |
| STDEV read length |
1,022.2 |
| Total bases |
135,642,959.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
40556 (100.0%) 135.6Mb |
| >Q7 |
40556 (100.0%) 135.6Mb |
| >Q10 |
38850 (95.8%) 130.4Mb |
| >Q12 |
30363 (74.9%) 103.3Mb |
| >Q15 |
12301 (30.3%) 42.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.0 (3129) |
| 2 |
19.7 (5148) |
| 3 |
19.5 (2621) |
| 4 |
19.4 (2980) |
| 5 |
19.3 (2460) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12458 (10.4) |
| 2 |
10772 (12.2) |
| 3 |
10062 (14.4) |
| 4 |
9957 (14.2) |
| 5 |
9488 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot