NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,005.1 |
| Mean read quality |
12.0 |
| Median read length |
2,992.0 |
| Median read quality |
13.5 |
| Number of reads |
314,019.0 |
| Read length N50 |
3,203.0 |
| STDEV read length |
878.9 |
| Total bases |
943,652,114.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
314019 (100.0%) 943.7Mb |
| >Q7 |
314019 (100.0%) 943.7Mb |
| >Q10 |
274026 (87.3%) 829.2Mb |
| >Q12 |
217978 (69.4%) 665.7Mb |
| >Q15 |
86231 (27.5%) 268.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.7 (2900) |
| 2 |
20.9 (3664) |
| 3 |
20.9 (2795) |
| 4 |
20.6 (4054) |
| 5 |
20.6 (2527) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10132 (8.1) |
| 2 |
10039 (14.0) |
| 3 |
9635 (13.3) |
| 4 |
9230 (8.3) |
| 5 |
9163 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot