NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,209.7 |
| Mean read quality |
10.8 |
| Median read length |
3,443.0 |
| Median read quality |
11.4 |
| Number of reads |
2,608.0 |
| Read length N50 |
3,777.0 |
| STDEV read length |
1,366.4 |
| Total bases |
8,370,940.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2608 (100.0%) 8.4Mb |
| >Q7 |
2608 (100.0%) 8.4Mb |
| >Q10 |
1847 (70.8%) 6.3Mb |
| >Q12 |
1114 (42.7%) 3.8Mb |
| >Q15 |
551 (21.1%) 1.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.8 (3777) |
| 2 |
19.8 (4848) |
| 3 |
19.4 (3920) |
| 4 |
19.3 (3684) |
| 5 |
19.2 (3085) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16489 (9.7) |
| 2 |
8099 (10.1) |
| 3 |
7980 (10.1) |
| 4 |
7078 (10.0) |
| 5 |
6881 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot