NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,141.6 |
| Mean read quality |
10.1 |
| Median read length |
2,311.5 |
| Median read quality |
10.7 |
| Number of reads |
3,492.0 |
| Read length N50 |
2,739.0 |
| STDEV read length |
1,263.7 |
| Total bases |
7,478,593.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3492 (100.0%) 7.5Mb |
| >Q7 |
3492 (100.0%) 7.5Mb |
| >Q10 |
2250 (64.4%) 5.4Mb |
| >Q12 |
1053 (30.2%) 2.6Mb |
| >Q15 |
332 (9.5%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.2 (3590) |
| 2 |
19.1 (3478) |
| 3 |
19.1 (1701) |
| 4 |
19.0 (2352) |
| 5 |
18.9 (2495) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10891 (7.4) |
| 2 |
9463 (11.8) |
| 3 |
8668 (10.0) |
| 4 |
7944 (13.4) |
| 5 |
7883 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot